What you need to do is pump the pedal several times with the engine off, it should get progressively harder then as you start the engine the pedal will be sucked away from under your foot. If it doesn't then the servo aint working properly if at all.
Could it just be that your new brakes need to bed in before reaching their full efficiency? if so then take it ewasy on them until they bed in as braking too hard can damage them.